J4_4V8Q_005
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*ACCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V8Q|1|AA|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8Q_005 not in the Motif Atlas
- Homologous match to J4_9DFE_004
- Geometric discrepancy: 0.0869
- The information below is about J4_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8Q|1|AA|G|1310
4V8Q|1|AA|G|1311
4V8Q|1|AA|U|1312
4V8Q|1|AA|U|1313
4V8Q|1|AA|C|1314
*
4V8Q|1|AA|G|1338
4V8Q|1|AA|G|1339
4V8Q|1|AA|U|1340
4V8Q|1|AA|U|1341
4V8Q|1|AA|A|1342
4V8Q|1|AA|G|1343
*
4V8Q|1|AA|C|1404
4V8Q|1|AA|U|1405
*
4V8Q|1|AA|A|1597
4V8Q|1|AA|C|1598
4V8Q|1|AA|C|1599
4V8Q|1|AA|C|1600
4V8Q|1|AA|G|1601
4V8Q|1|AA|U|1602
4V8Q|1|AA|A|1603
4V8Q|1|AA|C|1604
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A7
- 50S RIBOSOMAL PROTEIN L34
- Chain AX
- 50S RIBOSOMAL PROTEIN L23
Coloring options: