J4_4V8Q_011

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Q_011 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0953

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V8Q|1|AA|G|2643
4V8Q|1|AA|G|2644
4V8Q|1|AA|G|2645
4V8Q|1|AA|C|2646
*
4V8Q|1|AA|G|2674
4V8Q|1|AA|A|2675
4V8Q|1|AA|C|2676
*
4V8Q|1|AA|G|2731
4V8Q|1|AA|G|2732
4V8Q|1|AA|A|2733
4V8Q|1|AA|A|2734
4V8Q|1|AA|G|2735
*
4V8Q|1|AA|C|2769
4V8Q|1|AA|G|2770
4V8Q|1|AA|C|2771

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S RIBOSOMAL PROTEIN L3

Chain AN

50S RIBOSOMAL PROTEIN L13

Chain AO

50S RIBOSOMAL PROTEIN L14