J4_4V8Q_012

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V8Q|1|BA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Q_012 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0699

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V8Q|1|BA|G|115
4V8Q|1|BA|A|116
4V8Q|1|BA|G|117
4V8Q|1|BA|U|118
4V8Q|1|BA|A|119
4V8Q|1|BA|A|120
4V8Q|1|BA|C|121
4V8Q|1|BA|G|122
*
4V8Q|1|BA|U|239
4V8Q|1|BA|C|240
*
4V8Q|1|BA|G|286
4V8Q|1|BA|U|287
4V8Q|1|BA|A|288
4V8Q|1|BA|G|289
*
4V8Q|1|BA|C|311
4V8Q|1|BA|C|312

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S RIBOSOMAL PROTEIN S12

Chain BP

30S RIBOSOMAL PROTEIN S16

Chain BQ

30S RIBOSOMAL PROTEIN S17