J4_4V8Q_015
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V8Q|1|BV|U|8, 4V8Q|1|BV|U|48, 4V8Q|1|BV|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8Q_015 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.1624
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
4V8Q|1|BV|G|7
4V8Q|1|BV|U|8
4V8Q|1|BV|G|9
4V8Q|1|BV|G|10
*
4V8Q|1|BV|C|26
4V8Q|1|BV|G|27
4V8Q|1|BV|U|28
*
4V8Q|1|BV|A|44
4V8Q|1|BV|A|45
4V8Q|1|BV|G|46
4V8Q|1|BV|G|47
4V8Q|1|BV|U|48
4V8Q|1|BV|C|49
4V8Q|1|BV|G|50
*
4V8Q|1|BV|C|66
4V8Q|1|BV|C|67
Current chains
- Chain BV
- E-SITE or P-SITE TRNA FMET
Nearby chains
- Chain A0
- 50S RIBOSOMAL PROTEIN L27
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BM
- 30S RIBOSOMAL PROTEIN S13
Coloring options: