J4_4V8T_006
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GG*CU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8T_006 not in the Motif Atlas
- Homologous match to J4_8P9A_016
- Geometric discrepancy: 0.068
- The information below is about J4_8P9A_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_24280.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8T|1|5|G|1674
4V8T|1|5|G|1675
*
4V8T|1|5|C|1693
4V8T|1|5|U|1694
*
4V8T|1|5|A|1752
4V8T|1|5|G|1753
*
4V8T|1|5|U|1772
4V8T|1|5|C|1773
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain U
- 60S RIBOSOMAL PROTEIN L22-A
- Chain g
- 60S RIBOSOMAL PROTEIN L34-A
- Chain k
- 60S RIBOSOMAL PROTEIN L38
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