J4_4V8T_007
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8T_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0409
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V8T|1|5|G|2130
4V8T|1|5|A|2131
4V8T|1|5|C|2132
4V8T|1|5|U|2133
4V8T|1|5|G|2134
*
4V8T|1|5|C|2146
4V8T|1|5|A|2147
4V8T|1|5|U|2148
4V8T|1|5|A|2149
4V8T|1|5|G|2150
*
4V8T|1|5|U|2186
4V8T|1|5|G|2187
4V8T|1|5|A|2188
4V8T|1|5|U|2189
4V8T|1|5|U|2190
*
4V8T|1|5|A|2317
4V8T|1|5|U|2318
4V8T|1|5|U|2319
4V8T|1|5|A|2320
4V8T|1|5|A|2321
4V8T|1|5|C|2322
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain n
- 60S RIBOSOMAL PROTEIN L41-A
- Chain p
- 60S RIBOSOMAL PROTEIN L43-A
Coloring options: