J4_4V8U_005
3D structure
- PDB id
- 4V8U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V8U|1|AW|U|8, 4V8U|1|AW|U|47, 4V8U|1|AW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8U_005 not in the Motif Atlas
- Homologous match to J4_7LYF_001
- Geometric discrepancy: 0.2733
- The information below is about J4_7LYF_001
- Detailed Annotation
- Virus junction
- Broad Annotation
- Virus junction
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4V8U|1|AW|G|7
4V8U|1|AW|U|8
4V8U|1|AW|G|9
4V8U|1|AW|G|10
*
4V8U|1|AW|C|25
4V8U|1|AW|G|26
4V8U|1|AW|U|27
*
4V8U|1|AW|A|43
4V8U|1|AW|A|44
4V8U|1|AW|G|45
4V8U|1|AW|G|46
4V8U|1|AW|U|47
4V8U|1|AW|C|48
4V8U|1|AW|G|49
*
4V8U|1|AW|C|65
4V8U|1|AW|C|66
Current chains
- Chain AW
- RNA
Nearby chains
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
Coloring options: