J4_7LYF_001

3D structure

PDB id

7LYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUAG*CAG*CGGGUCC*GU

Length

16 nucleotides

Bulged bases

7LYF|1|A|U|8, 7LYF|1|A|U|110, 7LYF|1|A|C|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

7LYF|1|A|A|7
7LYF|1|A|U|8
7LYF|1|A|A|9
7LYF|1|A|G|10
*
7LYF|1|A|C|25
7LYF|1|A|A|26
7LYF|1|A|G|27
*
7LYF|1|A|C|106
7LYF|1|A|G|107
7LYF|1|A|G|108
7LYF|1|A|G|109
7LYF|1|A|U|110
7LYF|1|A|C|111
7LYF|1|A|C|112
*
7LYF|1|A|G|128
7LYF|1|A|U|129

Current chains

Chain A

RNA promoter stem-loop A fused with tRNA

Nearby chains