J4_4V8Y_007
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 4V8Y|1|B5|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Y|1|B5|U|1495
4V8Y|1|B5|C|1496
*
4V8Y|1|B5|G|1520
4V8Y|1|B5|G|1521
4V8Y|1|B5|U|1522
4V8Y|1|B5|U|1523
4V8Y|1|B5|A|1524
4V8Y|1|B5|G|1525
*
4V8Y|1|B5|C|1614
4V8Y|1|B5|C|1615
*
4V8Y|1|B5|G|1829
4V8Y|1|B5|G|1830
4V8Y|1|B5|U|1831
4V8Y|1|B5|C|1832
4V8Y|1|B5|G|1833
4V8Y|1|B5|U|1834
4V8Y|1|B5|A|1835
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BR
- 60S RIBOSOMAL PROTEIN L19-B
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34-A
- Chain Bk
- 60S RIBOSOMAL PROTEIN L38
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: