J4_4V8Y_009

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Y_009 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0409

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

4V8Y|1|B5|G|2130
4V8Y|1|B5|A|2131
4V8Y|1|B5|C|2132
4V8Y|1|B5|U|2133
4V8Y|1|B5|G|2134
*
4V8Y|1|B5|C|2146
4V8Y|1|B5|A|2147
4V8Y|1|B5|U|2148
4V8Y|1|B5|A|2149
4V8Y|1|B5|G|2150
*
4V8Y|1|B5|U|2186
4V8Y|1|B5|G|2187
4V8Y|1|B5|A|2188
4V8Y|1|B5|U|2189
4V8Y|1|B5|U|2190
*
4V8Y|1|B5|A|2317
4V8Y|1|B5|U|2318
4V8Y|1|B5|U|2319
4V8Y|1|B5|A|2320
4V8Y|1|B5|A|2321
4V8Y|1|B5|C|2322

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain Bn

60S RIBOSOMAL PROTEIN L41-B