J4_4V8Y_010

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Y_010 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.0879

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V8Y|1|B5|C|2192
4V8Y|1|B5|U|2193
4V8Y|1|B5|G|2194
*
4V8Y|1|B5|C|2248
4V8Y|1|B5|G|2249
*
4V8Y|1|B5|C|2267
4V8Y|1|B5|U|2268
4V8Y|1|B5|U|2269
4V8Y|1|B5|A|2270
4V8Y|1|B5|A|2271
4V8Y|1|B5|G|2272
4V8Y|1|B5|G|2273
4V8Y|1|B5|U|2274
4V8Y|1|B5|A|2275
4V8Y|1|B5|G|2276
*
4V8Y|1|B5|U|2310
4V8Y|1|B5|G|2311
4V8Y|1|B5|A|2312
4V8Y|1|B5|A|2313
4V8Y|1|B5|U|2314
4V8Y|1|B5|G|2315

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain Bn

60S RIBOSOMAL PROTEIN L41-B