3D structure

PDB id
4V92 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACUAUG*UU
Length
23 nucleotides
Bulged bases
4V92|1|A2|A|623, 4V92|1|A2|A|1026, 4V92|1|A2|U|1029, 4V92|1|A2|U|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V92_002 not in the Motif Atlas
Homologous match to J4_8C3A_022
Geometric discrepancy: 0.1427
The information below is about J4_8C3A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.4
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V92|1|A2|A|622
4V92|1|A2|A|623
4V92|1|A2|G|624
*
4V92|1|A2|C|975
4V92|1|A2|G|976
4V92|1|A2|A|977
4V92|1|A2|A|978
4V92|1|A2|A|979
4V92|1|A2|G|980
*
4V92|1|A2|C|1021
4V92|1|A2|C|1022
4V92|1|A2|A|1023
4V92|1|A2|U|1024
4V92|1|A2|A|1025
4V92|1|A2|A|1026
4V92|1|A2|A|1027
4V92|1|A2|C|1028
4V92|1|A2|U|1029
4V92|1|A2|A|1030
4V92|1|A2|U|1031
4V92|1|A2|G|1032
*
4V92|1|A2|U|1103
4V92|1|A2|U|1104

Current chains

Chain A2
18S RRNA

Nearby chains

Chain BL
US17
Chain BN
US15
Chain BO
US11
Chain BW
US8
Chain BX
US12
Chain Ba
ES26

Coloring options:


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