J4_4V92_002
3D structure
- PDB id
- 4V92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 4V92|1|A2|A|623, 4V92|1|A2|A|1026, 4V92|1|A2|U|1029, 4V92|1|A2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V92_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1427
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V92|1|A2|A|622
4V92|1|A2|A|623
4V92|1|A2|G|624
*
4V92|1|A2|C|975
4V92|1|A2|G|976
4V92|1|A2|A|977
4V92|1|A2|A|978
4V92|1|A2|A|979
4V92|1|A2|G|980
*
4V92|1|A2|C|1021
4V92|1|A2|C|1022
4V92|1|A2|A|1023
4V92|1|A2|U|1024
4V92|1|A2|A|1025
4V92|1|A2|A|1026
4V92|1|A2|A|1027
4V92|1|A2|C|1028
4V92|1|A2|U|1029
4V92|1|A2|A|1030
4V92|1|A2|U|1031
4V92|1|A2|G|1032
*
4V92|1|A2|U|1103
4V92|1|A2|U|1104
Current chains
- Chain A2
- 18S RRNA
Nearby chains
- Chain BL
- US17
- Chain BN
- US15
- Chain BO
- US11
- Chain BW
- US8
- Chain BX
- US12
- Chain Ba
- ES26
Coloring options: