J4_4V95_005

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V95|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V95_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0751

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V95|1|BA|C|268
4V95|1|BA|U|269
*
4V95|1|BA|G|370
4V95|1|BA|A|371
4V95|1|BA|G|372
4V95|1|BA|U|373
4V95|1|BA|A|374
4V95|1|BA|C|375
*
4V95|1|BA|G|399
4V95|1|BA|G|400
4V95|1|BA|A|401
4V95|1|BA|A|402
4V95|1|BA|U|403
4V95|1|BA|C|404
4V95|1|BA|U|405
4V95|1|BA|G|406
*
4V95|1|BA|U|421
4V95|1|BA|A|422
4V95|1|BA|A|423
4V95|1|BA|G|424

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BI

50S Ribosomal Protein L9