J4_4V95_015

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V95|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V95_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0868

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V95|1|CA|G|115
4V95|1|CA|A|116
4V95|1|CA|G|117
4V95|1|CA|U|118
4V95|1|CA|A|119
4V95|1|CA|A|120
4V95|1|CA|C|121
4V95|1|CA|G|122
*
4V95|1|CA|U|239
4V95|1|CA|C|240
*
4V95|1|CA|G|286
4V95|1|CA|U|287
4V95|1|CA|A|288
4V95|1|CA|G|289
*
4V95|1|CA|C|311
4V95|1|CA|C|312

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal Protein S16

Chain CQ

30S Ribosomal Protein S17