J4_4V97_015

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGGC*GAC*GGAAGG*CCGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V97_015 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1368

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V97|1|BA|G|2643
4V97|1|BA|G|2644
4V97|1|BA|G|2645
4V97|1|BA|C|2646
*
4V97|1|BA|G|2674
4V97|1|BA|A|2675
4V97|1|BA|C|2676
*
4V97|1|BA|G|2731
4V97|1|BA|G|2732
4V97|1|BA|A|2733
4V97|1|BA|A|2734
4V97|1|BA|G|2735
4V97|1|BA|G|2736
*
4V97|1|BA|C|2768
4V97|1|BA|C|2769
4V97|1|BA|G|2770
4V97|1|BA|C|2771

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BN

50S RIBOSOMAL PROTEIN L13

Chain BO

50S RIBOSOMAL PROTEIN L14