J4_4V9A_020
3D structure
- PDB id
- 4V9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 70S ribosome with tetracycline.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9A_020 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0729
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V9A|1|DA|C|297
4V9A|1|DA|G|298
4V9A|1|DA|A|299
4V9A|1|DA|A|300
4V9A|1|DA|G|301
*
4V9A|1|DA|C|316
4V9A|1|DA|G|317
4V9A|1|DA|C|318
4V9A|1|DA|C|319
*
4V9A|1|DA|G|323
4V9A|1|DA|A|324
4V9A|1|DA|G|325
*
4V9A|1|DA|C|337
4V9A|1|DA|G|338
4V9A|1|DA|U|339
4V9A|1|DA|A|340
4V9A|1|DA|G|341
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DF
- 50S ribosomal protein L4
- Chain DU
- 50S ribosomal protein L24
Coloring options: