J4_4V9C_018

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGGA*UACAAUG*CGUAGUCCGGAUUGG*CCAUGAAGUCGGAA

Length

40 nucleotides

Bulged bases

4V9C|1|CA|U|1240, 4V9C|1|CA|C|1302, 4V9C|1|CA|U|1308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9C|1|CA|U|943
4V9C|1|CA|G|944
4V9C|1|CA|G|945
4V9C|1|CA|A|946
*
4V9C|1|CA|U|1235
4V9C|1|CA|A|1236
4V9C|1|CA|C|1237
4V9C|1|CA|A|1238
4V9C|1|CA|A|1239
4V9C|1|CA|U|1240
4V9C|1|CA|G|1241
*
4V9C|1|CA|C|1296
4V9C|1|CA|G|1297
4V9C|1|CA|U|1298
4V9C|1|CA|A|1299
4V9C|1|CA|G|1300
4V9C|1|CA|U|1301
4V9C|1|CA|C|1302
4V9C|1|CA|C|1303
4V9C|1|CA|G|1304
4V9C|1|CA|G|1305
4V9C|1|CA|A|1306
4V9C|1|CA|U|1307
4V9C|1|CA|U|1308
4V9C|1|CA|G|1309
4V9C|1|CA|G|1310
*
4V9C|1|CA|C|1327
4V9C|1|CA|C|1328
4V9C|1|CA|A|1329
4V9C|1|CA|U|1330
4V9C|1|CA|G|1331
4V9C|1|CA|A|1332
4V9C|1|CA|A|1333
4V9C|1|CA|G|1334
4V9C|1|CA|U|1335
4V9C|1|CA|C|1336
4V9C|1|CA|G|1337
4V9C|1|CA|G|1338
4V9C|1|CA|A|1339
4V9C|1|CA|A|1340

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19

Chain CV

Transfer RNA; tRNA

Chain DF

50S ribosomal protein L5