J4_4V9C_023
3D structure
- PDB id
- 4V9C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Allosteric control of the ribosome by small-molecule antibiotics
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V9C|1|DA|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9C_023 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.1014
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V9C|1|DA|G|1310
4V9C|1|DA|G|1311
4V9C|1|DA|U|1312
4V9C|1|DA|U|1313
4V9C|1|DA|C|1314
*
4V9C|1|DA|G|1338
4V9C|1|DA|G|1339
4V9C|1|DA|U|1340
4V9C|1|DA|G|1341
4V9C|1|DA|A|1342
4V9C|1|DA|G|1343
*
4V9C|1|DA|C|1404
4V9C|1|DA|U|1405
*
4V9C|1|DA|A|1597
4V9C|1|DA|A|1598
4V9C|1|DA|U|1599
4V9C|1|DA|C|1600
4V9C|1|DA|G|1601
4V9C|1|DA|U|1602
4V9C|1|DA|A|1603
4V9C|1|DA|C|1604
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D2
- 50S ribosomal protein L34
- Chain DT
- 50S ribosomal protein L23
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