J4_4V9C_027

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V9C|1|DA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9C_027 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1209

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9C|1|DA|C|1833
4V9C|1|DA|U|1834
4V9C|1|DA|G|1835
*
4V9C|1|DA|C|1905
4V9C|1|DA|G|1906
*
4V9C|1|DA|C|1924
4V9C|1|DA|C|1925
4V9C|1|DA|U|1926
4V9C|1|DA|A|1927
4V9C|1|DA|A|1928
4V9C|1|DA|G|1929
4V9C|1|DA|G|1930
4V9C|1|DA|U|1931
4V9C|1|DA|A|1932
4V9C|1|DA|G|1933
*
4V9C|1|DA|C|1967
4V9C|1|DA|G|1968
4V9C|1|DA|A|1969
4V9C|1|DA|A|1970
4V9C|1|DA|U|1971
4V9C|1|DA|G|1972

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CV

Transfer RNA; tRNA

Chain DC

50S ribosomal protein L2