J4_4V9D_006

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V9D|1|BA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9D_006 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1756

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V9D|1|BA|G|142
4V9D|1|BA|A|143
4V9D|1|BA|G|144
*
4V9D|1|BA|C|178
4V9D|1|BA|A|179
4V9D|1|BA|U|180
4V9D|1|BA|A|181
4V9D|1|BA|A|182
4V9D|1|BA|C|183
4V9D|1|BA|G|184
*
4V9D|1|BA|C|193
4V9D|1|BA|C|194
4V9D|1|BA|A|195
4V9D|1|BA|A|196
4V9D|1|BA|A|197
4V9D|1|BA|G|198
*
4V9D|1|BA|U|219
4V9D|1|BA|G|220
4V9D|1|BA|C|221

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20