J4_4V9D_023

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4V9D|1|DA|G|1271, 4V9D|1|DA|A|1272, 4V9D|1|DA|U|1273, 4V9D|1|DA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9D_023 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0774

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9D|1|DA|C|1270
4V9D|1|DA|G|1271
4V9D|1|DA|A|1272
4V9D|1|DA|U|1273
4V9D|1|DA|A|1274
4V9D|1|DA|A|1275
4V9D|1|DA|A|1276
*
4V9D|1|DA|U|1294
4V9D|1|DA|C|1295
*
4V9D|1|DA|G|1645
4V9D|1|DA|C|1646
4V9D|1|DA|U|1647
4V9D|1|DA|U|1648
*
4V9D|1|DA|A|2009
4V9D|1|DA|G|2010

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DN

50S ribosomal protein L17

Chain DS

50S ribosomal protein L22