J4_4V9D_033

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V9D|1|DA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9D_033 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0809

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9D|1|DA|U|1313
4V9D|1|DA|C|1314
*
4V9D|1|DA|G|1338
4V9D|1|DA|G|1339
4V9D|1|DA|U|1340
4V9D|1|DA|G|1341
4V9D|1|DA|A|1342
4V9D|1|DA|G|1343
*
4V9D|1|DA|C|1404
4V9D|1|DA|U|1405
*
4V9D|1|DA|A|1597
4V9D|1|DA|A|1598
4V9D|1|DA|U|1599
4V9D|1|DA|C|1600
4V9D|1|DA|G|1601
4V9D|1|DA|U|1602
4V9D|1|DA|A|1603

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23