J4_4V9F_003
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAGCGAUAG*CG*CUGUC*GG
- Length
- 18 nucleotides
- Bulged bases
- 4V9F|1|0|G|1378, 4V9F|1|0|U|1380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_89787.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V9F|1|0|C|1374
4V9F|1|0|A|1375
4V9F|1|0|G|1376
4V9F|1|0|C|1377
4V9F|1|0|G|1378
4V9F|1|0|A|1379
4V9F|1|0|U|1380
4V9F|1|0|A|1381
4V9F|1|0|G|1382
*
4V9F|1|0|C|1400
4V9F|1|0|G|1401
*
4V9F|1|0|C|1721
4V9F|1|0|U|1722
4V9F|1|0|G|1723
4V9F|1|0|U|1724
4V9F|1|0|C|1725
*
4V9F|1|0|G|2050
4V9F|1|0|G|2051
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain P
- 50S ribosomal protein L19e
- Chain R
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L31e
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