Motif J4_75426.1 Version J4_75426.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 1-15 | 5-8 | 6-7 | 8-9 | 13-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_9E6Q_003 | 9E6Q | 0.0000 | 2 | 1 | LSU rRNA | C | 1397 | A | 1398 | G | 1399 | C | 1400 | A | 1403 | G | 1404 | * | C | 1422 | C | 1423 | * | G | 1788 | G | 1789 | C | 1790 | U | 1791 | C | 1792 | * | G | 2130 | G | 2131 | cWW | ntSs | cWW | cWW | cWW |
| 2 | J4_4V9F_003 | 4V9F | 0.3358 | 3 | 0 | LSU rRNA | C | 1374 | A | 1375 | G | 1376 | C | 1377 | A | 1381 | G | 1382 | * | C | 1400 | G | 1401 | * | C | 1721 | U | 1722 | G | 1723 | U | 1724 | C | 1725 | * | G | 2050 | G | 2051 | cWW | ntSs | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCGAAG*CC*GGCUC*GG | 1 |
| CAGCGAUAG*CG*CUGUC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCGAA**GCU* | 1 |
| AGCGAUA**UGU* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
- Heat map statistics
- Min 0.34 | Avg 0.17 | Max 0.34
Coloring options: