J4_4V9F_009

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

4V9F|1|0|U|2322, 4V9F|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4V9F|1|0|C|2319
4V9F|1|0|U|2320
4V9F|1|0|A|2321
4V9F|1|0|U|2322
4V9F|1|0|G|2323
*
4V9F|1|0|U|2377
4V9F|1|0|U|2378
4V9F|1|0|G|2379
4V9F|1|0|A|2380
4V9F|1|0|C|2381
*
4V9F|1|0|G|2407
4V9F|1|0|A|2408
4V9F|1|0|C|2409
*
4V9F|1|0|G|2418
4V9F|1|0|U|2419
4V9F|1|0|G|2420

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44e

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e