J4_4V9H_005

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V9H|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9H_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0873

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9H|1|BA|C|268
4V9H|1|BA|U|269
*
4V9H|1|BA|G|370
4V9H|1|BA|A|371
4V9H|1|BA|G|372
4V9H|1|BA|U|373
4V9H|1|BA|A|374
4V9H|1|BA|C|375
*
4V9H|1|BA|G|399
4V9H|1|BA|G|400
4V9H|1|BA|A|401
4V9H|1|BA|A|402
4V9H|1|BA|U|403
4V9H|1|BA|C|404
4V9H|1|BA|U|405
4V9H|1|BA|G|406
*
4V9H|1|BA|U|421
4V9H|1|BA|A|422
4V9H|1|BA|A|423
4V9H|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28