J4_4V9I_010

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4V9I|1|BA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_010 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1655

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|BA|G|1489
4V9I|1|BA|A|1490
4V9I|1|BA|C|1491
*
4V9I|1|BA|G|1512
4V9I|1|BA|C|1513
*
4V9I|1|BA|G|1570
4V9I|1|BA|G|1571
*
4V9I|1|BA|C|1592
4V9I|1|BA|C|1593

Current chains

Chain BA

23S ribosomal RNA

Nearby chains