J4_4V9I_020

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_020 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.089

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9I|1|DA|C|320
4V9I|1|DA|G|321
4V9I|1|DA|A|322
4V9I|1|DA|A|323
4V9I|1|DA|G|324
*
4V9I|1|DA|C|339
4V9I|1|DA|G|340
4V9I|1|DA|C|341
4V9I|1|DA|C|342
*
4V9I|1|DA|G|346
4V9I|1|DA|A|347
4V9I|1|DA|G|348
*
4V9I|1|DA|C|360
4V9I|1|DA|G|361
4V9I|1|DA|U|362
4V9I|1|DA|A|363
4V9I|1|DA|G|364

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24