J4_4V9I_025

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_025 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0712

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V9I|1|DA|G|1802
4V9I|1|DA|A|1803
4V9I|1|DA|C|1804
4V9I|1|DA|U|1805
4V9I|1|DA|G|1806
*
4V9I|1|DA|C|1818
4V9I|1|DA|A|1819
4V9I|1|DA|C|1820
4V9I|1|DA|A|1821
4V9I|1|DA|G|1822
*
4V9I|1|DA|C|1857
4V9I|1|DA|G|1858
4V9I|1|DA|A|1859
4V9I|1|DA|C|1860
*
4V9I|1|DA|G|1996
4V9I|1|DA|U|1997
4V9I|1|DA|A|1998
4V9I|1|DA|A|1999
4V9I|1|DA|C|2000

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2