J4_4V9K_001

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V9K|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9K_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.1314

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V9K|1|AA|G|115
4V9K|1|AA|A|116
4V9K|1|AA|G|117
4V9K|1|AA|U|118
4V9K|1|AA|A|119
4V9K|1|AA|A|120
4V9K|1|AA|C|121
4V9K|1|AA|G|122
*
4V9K|1|AA|U|239
4V9K|1|AA|C|240
*
4V9K|1|AA|G|286
4V9K|1|AA|U|287
4V9K|1|AA|A|288
4V9K|1|AA|G|289
*
4V9K|1|AA|C|311
4V9K|1|AA|C|312

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17