J4_4V9K_002

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V9K|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9K_002 not in the Motif Atlas

Homologous match to J4_6CZR_012

Geometric discrepancy: 0.2177

The information below is about J4_6CZR_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_36568.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9K|1|AA|G|142
4V9K|1|AA|A|143
4V9K|1|AA|G|144
*
4V9K|1|AA|C|178
4V9K|1|AA|A|179
4V9K|1|AA|U|180
4V9K|1|AA|G|181
4V9K|1|AA|U|182
4V9K|1|AA|G|183
*
4V9K|1|AA|C|194
4V9K|1|AA|A|195
4V9K|1|AA|A|196
4V9K|1|AA|A|197
4V9K|1|AA|G|198
*
4V9K|1|AA|C|219
4V9K|1|AA|G|220
4V9K|1|AA|C|221

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AT

30S ribosomal protein S20