J4_4V9K_006
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9K_006 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.1423
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9K|1|BA|C|297
4V9K|1|BA|G|298
4V9K|1|BA|A|299
4V9K|1|BA|A|300
4V9K|1|BA|G|301
*
4V9K|1|BA|C|316
4V9K|1|BA|G|317
4V9K|1|BA|C|318
4V9K|1|BA|C|319
*
4V9K|1|BA|G|323
4V9K|1|BA|A|324
4V9K|1|BA|G|325
*
4V9K|1|BA|C|337
4V9K|1|BA|G|338
4V9K|1|BA|U|339
4V9K|1|BA|A|340
4V9K|1|BA|G|341
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BF
- 50S ribosomal protein L4
- Chain BY
- 50S ribosomal protein L24
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