3D structure

PDB id
4V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GACUG*CACAG*CGAC*GUAAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V9L_012 not in the Motif Atlas
Homologous match to J4_9DFE_007
Geometric discrepancy: 0.1305
The information below is about J4_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V9L|1|BA|G|1772
4V9L|1|BA|A|1773
4V9L|1|BA|C|1774
4V9L|1|BA|U|1775
4V9L|1|BA|G|1776
*
4V9L|1|BA|C|1788
4V9L|1|BA|A|1789
4V9L|1|BA|C|1790
4V9L|1|BA|A|1791
4V9L|1|BA|G|1792
*
4V9L|1|BA|C|1827
4V9L|1|BA|G|1828
4V9L|1|BA|A|1829
4V9L|1|BA|C|1830
*
4V9L|1|BA|G|1975
4V9L|1|BA|U|1976
4V9L|1|BA|A|1977
4V9L|1|BA|A|1978
4V9L|1|BA|C|1979

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BD
50S ribosomal protein L2

Coloring options:


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