J4_4V9M_016

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V9M|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9M_016 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1239

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V9M|1|CA|G|115
4V9M|1|CA|A|116
4V9M|1|CA|G|117
4V9M|1|CA|U|118
4V9M|1|CA|A|119
4V9M|1|CA|A|120
4V9M|1|CA|C|121
4V9M|1|CA|G|122
*
4V9M|1|CA|U|239
4V9M|1|CA|C|240
*
4V9M|1|CA|G|286
4V9M|1|CA|U|287
4V9M|1|CA|A|288
4V9M|1|CA|G|289
*
4V9M|1|CA|C|311
4V9M|1|CA|C|312

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17