3D structure

PDB id
4V9N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4V9N|1|CA|G|576, 4V9N|1|CA|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V9N_020 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0645
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4V9N|1|CA|G|575
4V9N|1|CA|G|576
4V9N|1|CA|G|577
*
4V9N|1|CA|C|764
4V9N|1|CA|G|765
4V9N|1|CA|A|766
4V9N|1|CA|A|767
4V9N|1|CA|A|768
4V9N|1|CA|G|769
*
4V9N|1|CA|C|810
4V9N|1|CA|C|811
4V9N|1|CA|C|812
4V9N|1|CA|U|813
4V9N|1|CA|A|814
4V9N|1|CA|A|815
4V9N|1|CA|A|816
4V9N|1|CA|C|817
4V9N|1|CA|G|818
4V9N|1|CA|A|819
4V9N|1|CA|U|820
4V9N|1|CA|G|821
*
4V9N|1|CA|C|879
4V9N|1|CA|C|880

Current chains

Chain CA
16S rRNA (1504-MER)

Nearby chains

Chain CH
30S ribosomal protein S8
Chain CL
30S ribosomal protein S12
Chain CO
30S ribosomal protein S15
Chain CQ
30S ribosomal protein S17
Chain DA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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