J4_4V9O_029

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V9O|1|EA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9O_029 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0909

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9O|1|EA|C|268
4V9O|1|EA|C|269
*
4V9O|1|EA|G|370
4V9O|1|EA|A|371
4V9O|1|EA|G|372
4V9O|1|EA|U|373
4V9O|1|EA|A|374
4V9O|1|EA|G|375
*
4V9O|1|EA|U|399
4V9O|1|EA|G|400
4V9O|1|EA|A|401
4V9O|1|EA|A|402
4V9O|1|EA|U|403
4V9O|1|EA|A|404
4V9O|1|EA|U|405
4V9O|1|EA|G|406
*
4V9O|1|EA|C|421
4V9O|1|EA|A|422
4V9O|1|EA|A|423
4V9O|1|EA|G|424

Current chains

Chain EA

23S rRNA

Nearby chains

Chain EH

50S ribosomal protein L9

Chain EX

50S ribosomal protein L28