J4_4V9O_041

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V9O|1|FA|C|183, 4V9O|1|FA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9O_041 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1683

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V9O|1|FA|G|142
4V9O|1|FA|A|143
4V9O|1|FA|G|144
*
4V9O|1|FA|C|178
4V9O|1|FA|A|179
4V9O|1|FA|U|180
4V9O|1|FA|A|181
4V9O|1|FA|A|182
4V9O|1|FA|C|183
4V9O|1|FA|G|184
*
4V9O|1|FA|C|193
4V9O|1|FA|C|194
4V9O|1|FA|A|195
4V9O|1|FA|A|196
4V9O|1|FA|A|197
4V9O|1|FA|G|198
*
4V9O|1|FA|U|219
4V9O|1|FA|G|220
4V9O|1|FA|C|221

Current chains

Chain FA

16S rRNA

Nearby chains

Chain FT

30S ribosomal protein S20