J4_4V9P_043

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V9P|1|GA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9P_043 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0877

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9P|1|GA|C|268
4V9P|1|GA|C|269
*
4V9P|1|GA|G|370
4V9P|1|GA|A|371
4V9P|1|GA|G|372
4V9P|1|GA|U|373
4V9P|1|GA|A|374
4V9P|1|GA|G|375
*
4V9P|1|GA|U|399
4V9P|1|GA|G|400
4V9P|1|GA|A|401
4V9P|1|GA|A|402
4V9P|1|GA|U|403
4V9P|1|GA|A|404
4V9P|1|GA|U|405
4V9P|1|GA|G|406
*
4V9P|1|GA|C|421
4V9P|1|GA|A|422
4V9P|1|GA|A|423
4V9P|1|GA|G|424

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GH

50S ribosomal protein L9

Chain GX

50S ribosomal protein L28