J4_4V9Q_020

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4V9Q|1|CA|G|1271, 4V9Q|1|CA|A|1272, 4V9Q|1|CA|U|1273, 4V9Q|1|CA|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9Q_020 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0727

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9Q|1|CA|C|1270
4V9Q|1|CA|G|1271
4V9Q|1|CA|A|1272
4V9Q|1|CA|U|1273
4V9Q|1|CA|A|1274
4V9Q|1|CA|A|1275
4V9Q|1|CA|A|1276
*
4V9Q|1|CA|U|1294
4V9Q|1|CA|C|1295
*
4V9Q|1|CA|G|1645
4V9Q|1|CA|C|1646
4V9Q|1|CA|G|1647
4V9Q|1|CA|C|1648
*
4V9Q|1|CA|G|2009
4V9Q|1|CA|G|2010

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L32

Chain CN

50S ribosomal protein L17

Chain CS

50S ribosomal protein L22