J4_4V9Q_022

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4V9Q|1|CA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9Q_022 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0939

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9Q|1|CA|U|1313
4V9Q|1|CA|C|1314
*
4V9Q|1|CA|G|1338
4V9Q|1|CA|G|1339
4V9Q|1|CA|U|1340
4V9Q|1|CA|U|1341
4V9Q|1|CA|A|1342
4V9Q|1|CA|G|1343
*
4V9Q|1|CA|C|1404
4V9Q|1|CA|U|1405
*
4V9Q|1|CA|A|1597
4V9Q|1|CA|C|1598
4V9Q|1|CA|C|1599
4V9Q|1|CA|C|1600
4V9Q|1|CA|G|1601
4V9Q|1|CA|U|1602
4V9Q|1|CA|A|1603

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34

Chain CT

50S ribosomal protein L23