J4_4V9R_005

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V9R|1|BA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9R_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0602

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V9R|1|BA|C|257
4V9R|1|BA|U|258
*
4V9R|1|BA|G|397
4V9R|1|BA|A|398
4V9R|1|BA|G|399
4V9R|1|BA|U|400
4V9R|1|BA|A|401
4V9R|1|BA|C|402
*
4V9R|1|BA|G|426
4V9R|1|BA|G|427
4V9R|1|BA|A|428
4V9R|1|BA|A|429
4V9R|1|BA|U|430
4V9R|1|BA|C|431
4V9R|1|BA|U|432
4V9R|1|BA|G|433
*
4V9R|1|BA|U|448
4V9R|1|BA|A|449
4V9R|1|BA|A|450
4V9R|1|BA|G|451

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BI

50S Ribosomal Protein L9