J4_4V9R_009

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4V9R|1|BA|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9R_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0634

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V9R|1|BA|U|1359
4V9R|1|BA|C|1360
*
4V9R|1|BA|G|1384
4V9R|1|BA|G|1385
4V9R|1|BA|U|1386
4V9R|1|BA|U|1387
4V9R|1|BA|A|1388
4V9R|1|BA|G|1389
*
4V9R|1|BA|C|1450
4V9R|1|BA|U|1451
*
4V9R|1|BA|A|1643
4V9R|1|BA|C|1644
4V9R|1|BA|C|1645
4V9R|1|BA|C|1646
4V9R|1|BA|G|1647
4V9R|1|BA|U|1648
4V9R|1|BA|A|1649

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34

Chain BX

50S Ribosomal Protein L23