J4_4V9R_019
3D structure
- PDB id
- 4V9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 4V9R|1|DA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9R_019 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.0704
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V9R|1|DA|C|268
4V9R|1|DA|U|269
*
4V9R|1|DA|G|370
4V9R|1|DA|A|371
4V9R|1|DA|G|372
4V9R|1|DA|U|373
4V9R|1|DA|A|374
4V9R|1|DA|C|375
*
4V9R|1|DA|G|399
4V9R|1|DA|G|400
4V9R|1|DA|A|401
4V9R|1|DA|A|402
4V9R|1|DA|U|403
4V9R|1|DA|C|404
4V9R|1|DA|U|405
4V9R|1|DA|G|406
*
4V9R|1|DA|U|421
4V9R|1|DA|A|422
4V9R|1|DA|A|423
4V9R|1|DA|G|424
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D1
- 50S Ribosomal Protein L28
- Chain DI
- 50S Ribosomal Protein L9
Coloring options: