J4_4V9S_015

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V9S|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9S_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.066

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V9S|1|CA|G|115
4V9S|1|CA|A|116
4V9S|1|CA|G|117
4V9S|1|CA|U|118
4V9S|1|CA|A|119
4V9S|1|CA|A|120
4V9S|1|CA|C|121
4V9S|1|CA|G|122
*
4V9S|1|CA|U|239
4V9S|1|CA|C|240
*
4V9S|1|CA|G|286
4V9S|1|CA|U|287
4V9S|1|CA|A|288
4V9S|1|CA|G|289
*
4V9S|1|CA|C|311
4V9S|1|CA|C|312

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal Protein S16

Chain CQ

30S Ribosomal Protein S17