J4_4V9S_019

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V9S|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9S_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0732

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V9S|1|DA|C|268
4V9S|1|DA|U|269
*
4V9S|1|DA|G|370
4V9S|1|DA|A|371
4V9S|1|DA|G|372
4V9S|1|DA|U|373
4V9S|1|DA|A|374
4V9S|1|DA|C|375
*
4V9S|1|DA|G|399
4V9S|1|DA|G|400
4V9S|1|DA|A|401
4V9S|1|DA|A|402
4V9S|1|DA|U|403
4V9S|1|DA|C|404
4V9S|1|DA|U|405
4V9S|1|DA|G|406
*
4V9S|1|DA|U|421
4V9S|1|DA|A|422
4V9S|1|DA|A|423
4V9S|1|DA|G|424

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DI

50S Ribosomal Protein L9