J4_4W21_001

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCAAG*CCCAGCCC*GAC*GGUAGCGG

Length

25 nucleotides

Bulged bases

4W21|1|5|C|216, 4W21|1|5|C|217, 4W21|1|5|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|194
4W21|1|5|C|195
4W21|1|5|C|196
4W21|1|5|A|197
4W21|1|5|A|198
4W21|1|5|G|199
*
4W21|1|5|C|215
4W21|1|5|C|216
4W21|1|5|C|217
4W21|1|5|A|218
4W21|1|5|G|219
4W21|1|5|C|220
4W21|1|5|C|221
4W21|1|5|C|222
*
4W21|1|5|G|226
4W21|1|5|A|227
4W21|1|5|C|228
*
4W21|1|5|G|240
4W21|1|5|G|241
4W21|1|5|U|242
4W21|1|5|A|243
4W21|1|5|G|244
4W21|1|5|C|245
4W21|1|5|G|246
4W21|1|5|G|247

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA