J4_4W21_002

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUC*GCCGG*CCACGCGCGCG*CGGCGGAGCGA

Length

31 nucleotides

Bulged bases

4W21|1|5|C|1237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|U|980
4W21|1|5|C|981
4W21|1|5|U|982
4W21|1|5|C|983
*
4W21|1|5|G|1070
4W21|1|5|C|1071
4W21|1|5|C|1072
4W21|1|5|G|1073
4W21|1|5|G|1074
*
4W21|1|5|C|1236
4W21|1|5|C|1237
4W21|1|5|A|1238
4W21|1|5|C|1239
4W21|1|5|G|1240
4W21|1|5|C|1241
4W21|1|5|G|1242
4W21|1|5|C|1243
4W21|1|5|G|1244
4W21|1|5|C|1245
4W21|1|5|G|1246
*
4W21|1|5|C|1264
4W21|1|5|G|1265
4W21|1|5|G|1266
4W21|1|5|C|1267
4W21|1|5|G|1268
4W21|1|5|G|1269
4W21|1|5|A|1270
4W21|1|5|G|1271
4W21|1|5|C|1272
4W21|1|5|G|1273
4W21|1|5|A|1274

Current chains

Chain 5

28S ribosomal RNA

Nearby chains