J4_4W21_003

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUCAG*UC*GGCCGUAC

Length

21 nucleotides

Bulged bases

4W21|1|5|C|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|2406
4W21|1|5|G|2407
4W21|1|5|U|2408
4W21|1|5|U|2409
4W21|1|5|C|2410
*
4W21|1|5|G|2434
4W21|1|5|G|2435
4W21|1|5|U|2436
4W21|1|5|C|2437
4W21|1|5|A|2438
4W21|1|5|G|2439
*
4W21|1|5|U|2538
4W21|1|5|C|2539
*
4W21|1|5|G|2777
4W21|1|5|G|2778
4W21|1|5|C|2779
4W21|1|5|C|2780
4W21|1|5|G|2781
4W21|1|5|U|2782
4W21|1|5|A|2783
4W21|1|5|C|2784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA