J4_4W23_001

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

4W23|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|C|98
4W23|1|2|A|99
4W23|1|2|U|100
4W23|1|2|U|101
4W23|1|2|A|102
4W23|1|2|A|103
4W23|1|2|A|104
4W23|1|2|U|105
4W23|1|2|C|106
*
4W23|1|2|G|355
4W23|1|2|C|356
4W23|1|2|C|357
*
4W23|1|2|G|405
4W23|1|2|U|406
4W23|1|2|G|407
4W23|1|2|A|408
4W23|1|2|C|409
*
4W23|1|2|G|431
4W23|1|2|G|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17

Chain X

Ribosomal protein uS12