J4_4W23_002
3D structure
- PDB id
- 4W23 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 4W23|1|2|A|672, 4W23|1|2|A|1083, 4W23|1|2|C|1085, 4W23|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W23|1|2|A|671
4W23|1|2|A|672
4W23|1|2|G|673
*
4W23|1|2|C|1032
4W23|1|2|G|1033
4W23|1|2|A|1034
4W23|1|2|A|1035
4W23|1|2|A|1036
4W23|1|2|G|1037
*
4W23|1|2|C|1078
4W23|1|2|C|1079
4W23|1|2|A|1080
4W23|1|2|U|1081
4W23|1|2|A|1082
4W23|1|2|A|1083
4W23|1|2|A|1084
4W23|1|2|C|1085
4W23|1|2|G|1086
4W23|1|2|A|1087
4W23|1|2|U|1088
4W23|1|2|G|1089
*
4W23|1|2|U|1160
4W23|1|2|U|1161
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein uS17
- Chain N
- Ribosomal protein uS15
- Chain O
- Ribosomal protein uS11
- Chain W
- Ribosomal protein uS8
- Chain X
- Ribosomal protein uS12
- Chain a
- Ribosomal protein eS26
Coloring options: